{
  "_id": "6a1864b8acfb0bcc41dbfb55",
  "Package": "DHARMa",
  "Title": "Residual Diagnostics for Hierarchical (Multi-Level / Mixed)\nRegression Models",
  "Version": "0.5.0",
  "Date": "2026-05-06",
  "Authors@R": "c(person(\"Florian\", \"Hartig\", email = \"florian.hartig@biologie.uni-regensburg.de\", role = c(\"aut\", \"cre\"), comment=c(ORCID=\"0000-0002-6255-9059\")), person(\"Lukas\", \"Lohse\", role = \"ctb\"), person(\"Melina\", \"de Souza Leite\", role = \"ctb\", comment=c(ORCID=\"0000-0003-0505-0667\")),  person(\"Cosmina\", \"Werneke\", role = \"ctb\", comment=c(ORCID=\"0009-0008-7629-2173\")))",
  "Description": "\"Uses a simulation-based approach to create readily\ninterpretable scaled (quantile) residuals for fitted\ngeneralized linear (mixed) models. Currently supported are\nlinear and generalized linear (mixed) models from 'lme4'\n(classes 'lmerMod', 'glmerMod'), 'glmmTMB', 'GLMMadaptive',\n'spaMM', and 'brms' (simple models); phylogenetic linear models\nfrom 'phylolm' (classes 'phylolm' and 'phyloglm'); generalized\nadditive models ('gam' from 'mgcv'); 'glm' (including 'negbin'\nfrom 'MASS', but excluding quasi-distributions) and 'lm' model\nclasses. Moreover, externally created simulations, e.g.\nposterior predictive simulations from Bayesian software such as\n'JAGS', 'STAN', or 'BUGS' can be processed as well. The\nresulting residuals are standardized to values between 0 and 1\nand can be interpreted as intuitively as residuals from a\nlinear regression. The package also provides a number of plot\nand test functions for typical model misspecification problems,\nsuch as over/underdispersion, zero-inflation, and residual\nspatial, temporal and phylogenetic autocorrelation.\"",
  "License": "GPL (>= 3)",
  "URL": "http://florianhartig.github.io/DHARMa/",
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  "BugReports": "https://github.com/florianhartig/DHARMa/issues",
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  "Repository": "https://florianhartig.r-universe.dev",
  "Date/Publication": "2026-05-28 13:09:59 UTC",
  "RemoteUrl": "https://github.com/florianhartig/dharma",
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  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-28 15:01:36 UTC",
    "User": "root"
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  "Author": "Florian Hartig [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6255-9059>),\nLukas Lohse [ctb],\nMelina de Souza Leite [ctb] (ORCID:\n<https://orcid.org/0000-0003-0505-0667>),\nCosmina Werneke [ctb] (ORCID: <https://orcid.org/0009-0008-7629-2173>)",
  "Maintainer": "Florian Hartig <florian.hartig@biologie.uni-regensburg.de>",
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  "_created": "2026-05-28T15:01:36.000Z",
  "_published": "2026-05-28T15:52:24.077Z",
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  "_exports": [
    "benchmarkRuntime",
    "createData",
    "createDHARMa",
    "getData",
    "getFamily",
    "getFitted",
    "getFixedEffects",
    "getObservedResponse",
    "getPearsonResiduals",
    "getPredictorNames",
    "getQuantile",
    "getRandomState",
    "getRefit",
    "getResiduals",
    "getSimulations",
    "outliers",
    "plotConventionalResiduals",
    "plotQQunif",
    "plotResiduals",
    "plotResidualsAll",
    "plotSimulatedResiduals",
    "recalculateResiduals",
    "runBenchmarks",
    "simulateLRT",
    "simulateResiduals",
    "testCategorical",
    "testDispersion",
    "testGeneric",
    "testOutliers",
    "testOverdispersion",
    "testOverdispersionParametric",
    "testPhylogeneticAutocorrelation",
    "testQuantiles",
    "testResiduals",
    "testSimulatedResiduals",
    "testSpatialAutocorrelation",
    "testTemporalAutocorrelation",
    "testUniformity",
    "testZeroInflation",
    "transformQuantiles"
  ],
  "_datasets": [
    {
      "name": "hurricanes",
      "title": "Hurricanes",
      "object": "hurricanes",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "Year",
        "Name",
        "MasFem",
        "MinPressure_before",
        "Minpressure_Updated_2014",
        "Gender_MF",
        "Category",
        "alldeaths",
        "NDAM",
        "Elapsed_Yrs",
        "Source",
        "ZMasFem",
        "ZMinPressure_A",
        "ZNDAM"
      ],
      "rows": 92,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "DHARMa-package",
      "title": "DHARMa: Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models",
      "topics": [
        "DHARMa-package",
        "DHARMa"
      ]
    },
    {
      "page": "benchmarkRuntime",
      "title": "Benchmark runtimes of several functions",
      "topics": [
        "benchmarkRuntime"
      ]
    },
    {
      "page": "createData",
      "title": "Simulate test data",
      "topics": [
        "createData"
      ]
    },
    {
      "page": "createDHARMa",
      "title": "Create a DHARMa object from hand-coded simulations or Bayesian posterior predictive simulations.",
      "topics": [
        "createDHARMa"
      ]
    },
    {
      "page": "getData",
      "title": "Get model data",
      "topics": [
        "getData",
        "getData.brmsfit",
        "getData.default",
        "getData.merMod"
      ]
    },
    {
      "page": "getFamily",
      "title": "Get model family",
      "topics": [
        "getFamily",
        "getFamily.default",
        "getFamily.phyloglm",
        "getFamily.phylolm"
      ]
    },
    {
      "page": "getFitted",
      "title": "Get fitted/predicted values",
      "topics": [
        "getFitted",
        "getFitted.brmsfit",
        "getFitted.default",
        "getFitted.gam",
        "getFitted.HLfit",
        "getFitted.MixMod",
        "getFitted.phyloglm",
        "getFitted.phylolm"
      ]
    },
    {
      "page": "getFixedEffects",
      "title": "Extract fixed effects of a supported model",
      "topics": [
        "getFixedEffects",
        "getFixedEffects.brmsfit",
        "getFixedEffects.default",
        "getFixedEffects.MixMod"
      ]
    },
    {
      "page": "getObservedResponse",
      "title": "Get model response",
      "topics": [
        "getObservedResponse",
        "getObservedResponse.default",
        "getObservedResponse.HLfit",
        "getObservedResponse.phyloglm",
        "getObservedResponse.phylolm"
      ]
    },
    {
      "page": "getPearsonResiduals",
      "title": "Get Pearson residuals",
      "topics": [
        "getPearsonResiduals",
        "getPearsonResiduals.brms",
        "getPearsonResiduals.default",
        "getPearsonResiduals.gam"
      ]
    },
    {
      "page": "getPredictorNames",
      "title": "Get predictor names",
      "topics": [
        "getPredictorNames",
        "getPredictorNames.default",
        "getPredictorNames.MixMod"
      ]
    },
    {
      "page": "getQuantile",
      "title": "Calculate Residual Quantiles",
      "topics": [
        "getQuantile"
      ]
    },
    {
      "page": "getRandomState",
      "title": "Record and restore a random state",
      "topics": [
        "getRandomState"
      ]
    },
    {
      "page": "getRefit",
      "title": "Get model refit",
      "topics": [
        "getRefit",
        "getRefit.brmsfit",
        "getRefit.default",
        "getRefit.glmmTMB",
        "getRefit.HLfit",
        "getRefit.lm",
        "getRefit.MixMod",
        "getRefit.phyloglm",
        "getRefit.phylolm"
      ]
    },
    {
      "page": "getResiduals",
      "title": "Get model residuals",
      "topics": [
        "getResiduals",
        "getResiduals.brmsfit",
        "getResiduals.default",
        "getResiduals.MixMod"
      ]
    },
    {
      "page": "getSimulations",
      "title": "Get model simulations",
      "topics": [
        "getSimulations",
        "getSimulations.brmsfit",
        "getSimulations.default",
        "getSimulations.gam",
        "getSimulations.glmmTMB",
        "getSimulations.HLfit",
        "getSimulations.merMod",
        "getSimulations.MixMod",
        "getSimulations.negbin",
        "getSimulations.phyloglm",
        "getSimulations.phylolm"
      ]
    },
    {
      "page": "hist.DHARMa",
      "title": "Histogram of DHARMa residuals",
      "topics": [
        "hist.DHARMa"
      ]
    },
    {
      "page": "hurricanes",
      "title": "Hurricanes",
      "topics": [
        "hurricanes"
      ]
    },
    {
      "page": "outliers",
      "title": "Return outliers",
      "topics": [
        "outliers"
      ]
    },
    {
      "page": "plot.DHARMa",
      "title": "DHARMa standard residual plots",
      "topics": [
        "plot.DHARMa"
      ]
    },
    {
      "page": "plot.DHARMaBenchmark",
      "title": "Plots DHARMa benchmarks",
      "topics": [
        "plot.DHARMaBenchmark"
      ]
    },
    {
      "page": "plotConventionalResiduals",
      "title": "Conventional residual plot",
      "topics": [
        "plotConventionalResiduals"
      ]
    },
    {
      "page": "plotQQunif",
      "title": "Quantile-quantile plot for a uniform distribution",
      "topics": [
        "plotQQunif"
      ]
    },
    {
      "page": "plotResiduals",
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